Publications
Simple, fast, and reliable analysis of label-free proteomics data with the Proteomics Eye (ProtE)
Theodoros Margelos, Manousos Makridakis, Charis Gonidaki, Foteini Paradeisi, Manos Vossos, Jerome Zoidakis, Antonia Vlahou, Rafael Stroggilos
Urinary collagen peptides predict mortality
Maria Frantzi, Felix Keller, Agnieszka Latosinska, Joachim Beige, Alexandre Mebazaa, Anaïs Caillard, Dewei An, Paul Perco, Joost P. Schanstra, Lorenzo Catanese, Ralph Wendt, Harald Rupprecht, Jan A. Staessen, Antonia Vlahou, Harald Mischak, Justyna Siwy
cSTAR analysis identifies endothelial cell cycle as a key regulator of flow-dependent artery remodeling
Hanqiang Deng, Oleksii S. Rukhlenko, Divyesh Joshi, Xiaoyue Hu, Philipp Junk, Anna Tuliakova, Boris N. Kholodenko and Martin A. Schwartz
Genomic scarring score predicts the response to PARP inhibitors in non-small cell lung cancer
Katerina Tsilingiri, Anna Chalari, Georgia Christopoulou, Alexandra Voutsina, Pantelis Constantoulakis, Κonstantinos Potaris, Ioannis Vamvakaris, Dora Hatzidaki, Georgina Zachou, Giannis Vatsellas, Vassilis Georgoulias, Athanasios Kotsakis & Apostolos Klinakis
A synthetic data generation pipeline to reproducibly mirror high-resolution multi-variable peptidomics and real-patient clinical data
Mayra Alejandra Jaimes Campos, Stipe Kabić, Agnieszka Latosinska, Ena Anicic, Justyna Siwy, Vinko Dragušica, Harald Rupprecht, Lorenzo Catanese, Felix Keller, Paul Perco, Enrique Gomez- Gomez, Joachim Beige, Antonia Vlahou, Harald Mischak, Davorin Vukelić, Tomislav Križan, Maria Frantzi
Cell State Transition Models Stratify Breast Cancer Cell Phenotypes and Reveal New Therapeutic Targets
Oleksii S. Rukhlenko, Hiroaki Imoto, Ayush Tambde, Amy McGillycuddy, Philipp Junk, Anna Tuliakova, Walter Kolch, and Boris N. Kholodenko
Cell-specific models reveal conformation-specific RAF inhibitor combinations that synergistically inhibit ERK signaling in pancreatic cancer cells
Thomas Sevrin, Hiroaki Imoto, Sarah Robertson, Nora Rauch, Uscinnia Dyn’ko, Katerina Koubova, Kieran Wynne, Walter Kolch, Oleksii S. Rukhlenko, Boris N. Kholodenko
